rabbit polyclonal  (Proteintech)

Journal: EMBO Reports

Article Title: Sequestration of LINE ‐1 in cytosolic aggregates by MOV10 restricts retrotransposition

doi: 10.15252/embr.202154458

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Article Snippet: The antibodies used were as follows: rabbit polyclonal anti‐L1 ORF1p (1:5,000, gift from Prof. O'Carroll), rabbit polyclonal anti‐Dicer (1:2,000, SAB42000087, Sigma), rabbit polyclonal anti‐MOV10 antibody (1:2,000, 10,370‐1‐AP, Proteintech), rabbit polyclonal anti‐Argonaute2 (1:2,000 C34C6 Cell Signaling Technologies), rabbit anti‐Drosha (1:2,000, D28B1 Cell Signaling Technology), rat monoclonal anti‐HA (1:500, 3F10, Roche), mouse anti‐Tubulin antibody (1:10,000, A01410, GenScript), rabbit anti‐LaminB1 (1:5,000, ab16048, Abcam), rabbit anti‐DDX6 (1:2,000, GTX102795 GeneTex), anti‐rabbit IgG HRP‐linked (1:10,000, 7074, Cell Signaling Technologies), anti‐mouse IgG HRP‐linked (1:10,000, 7076, Cell Signaling Technologies), and anti‐rat IgG HRP‐linked antibody (1:10,000, 7077, Cell Signaling Technologies).

Techniques: Recombinant, Sequencing, Amplification, Mutagenesis, Negative Control, Transfection, Protease Inhibitor, Plasmid Preparation, Nick Translation, Western Blot, Reverse Transcription, Luciferase, Software

Journal: Cell Reports

Article Title: The Arabidopsis F-box protein FBW2 targets AGO1 for degradation to prevent spurious loading of illegitimate small RNA

doi: 10.1016/j.celrep.2022.110671

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Article Snippet: Rabbit polyclonal anti-AGO2 , Agrisera , Cat# AS13 2682.

Techniques: Virus, Recombinant, SYBR Green Assay, Western Blot, Protease Inhibitor, Isolation, Reverse Transcription, Magnetic Beads, Mass Spectrometry, Cloning, Sequencing, Software

Journal: Cell

Article Title: Phase transitions in the assembly and function of human miRISC

doi: 10.1016/j.cell.2018.02.051

Figure Lengend Snippet: (A) Cartoon representation of Ago2 illustrates the position of the trp-binding region. (B) Close up view of the trp-binding region. Fo-Fc tryptophan omit map, contoured at 2.5 σ, (green mesh) shows well-ordered indole side chains of three bound tryptophan molecules. (C) Surface representation of the region illustrates the three trp-binding pockets. Curved lines indicate approximate distances between adjacent pockets. See also Figure S1 and Table S1.

Article Snippet: Rabbit polyclonal anti-human Ago2 , Cell Signaling , Cat# 2897S.

Techniques: Binding Assay

Journal: Cell

Article Title: Phase transitions in the assembly and function of human miRISC

doi: 10.1016/j.cell.2018.02.051

Figure Lengend Snippet: (A) Linear schematic of TNRC6B domain structure. MBP fusion of the ABD used in pull down assays, and sequence context of motif I (W623 and W634) are indicated. (B) Coomassie stained SDS gel showing pull down of ABD variants by wild type (WT) Ago2. AllA is an ABD variant in which all trp residues have been replaced with alanine. Ago2, wild type ABD variants, and AllA ABD variants are indicated by single, double, and triple asterix, respectively. (C) Schematic of trp-binding pockets in Ago2 with residues mutated to disable individual pockets indicated in blue (K660S, P590G, and R688S mutations in pockets 1, 2 and 3, respectively). (D) Pull down of ABD variants by Ago2 with individual trp-binding pockets inactivated. (E) Pull down of ABD by Ago2 with combinations of trp-binding pockets inactivated. (F) Schematic of ABD construct with sequence context motif II (W875, W896, and W910) indicated. (G) Pull down of W875, W896, and W910 AllA-ABD variants by WT Ago2, and (H) by trp-binding pocket Ago2 mutants. See also Figure S2.

Article Snippet: Rabbit polyclonal anti-human Ago2 , Cell Signaling , Cat# 2897S.

Techniques: Sequencing, Staining, SDS-Gel, Variant Assay, Binding Assay, Construct

Journal: Cell

Article Title: Phase transitions in the assembly and function of human miRISC

doi: 10.1016/j.cell.2018.02.051

Figure Lengend Snippet: (A) Initial observation of ABD-Ago2 phase separation. Solutions containing the TNRC6B ABD become turbid upon introduction of Ago2. Solutions of the AllA-ABD mutant remain clear. (B) Turbidity, measured by absorbance of 480 nm light, of solutions containing Ago2 (20 µM), ABD (40 µM), or ABD + Ago2 (40µM and 20µM, respectively) plotted as a function of temperature. (C) Turbidity versus temperature for ABD samples (10 µM) with various concentrations of Ago2. (D) Light microscopy images of mixtures of ABD (20 µM) and Ago2 taken at room temperature (~23 °C). Scale bar, 10 µm. (E) Time-lapse images showing fusion of three adjacent ABD-Ago2 droplets (left), and confocal microscopy images showing fusion of ABD-Ago2 droplets containing Alexa-488 labeled ABD (right). (F) Fluorescence microscopy images from a FRAP experiment in which an entire ABD-Ago2 droplet was bleached. 10% of Ago2 molecules were labeled with TMR, and ~10% ABD molecules were labeled with Alexa Fluor 488. (G) FRAP recovery curves for three ABD-Ago2 droplets with error bars indicating SEM. All droplets were formed in 100 mM KOAc and 20 nM NaCl. See also Figures S3, and Movies S1 and S2.

Article Snippet: Rabbit polyclonal anti-human Ago2 , Cell Signaling , Cat# 2897S.

Techniques: Mutagenesis, Light Microscopy, Confocal Microscopy, Labeling, Fluorescence, Microscopy

Journal: Cell

Article Title: Phase transitions in the assembly and function of human miRISC

doi: 10.1016/j.cell.2018.02.051

Figure Lengend Snippet: (A) Fluorescence microscopy images showing Ago2 (TMR labeled) promotes phase separation of full length TNRC6B (Alexa Fluor 488 labeled) in vitro. (B) Spherical miRISC droplets formed in vitro coalesced into larger clusters over time. (C) Representative fluorescence microscopy images from miRISC FRAP experiments. (D) FRAP recovery curves for three miRISC droplets with error bars indicating SEM. (E) Live cell images showing fusion of two GFP-TNRC6B cytoplasmic foci in HEK 293 cells over time. (F) Representative live cell images of GFP-TNRC6B cytoplasmic foci FRAP experiments. (G) FRAP recovery curves for three GFP-TNRC6B cytoplasmic foci with error bars indicating SEM. (H) Representative live cell images of GFP-TNRC6B/mCherry-Ago2 cytoplasmic foci FRAP experiments. (I) FRAP recovery curves for four GFP-TNRC6B/mCherry-Ago2 cytoplasmic foci with error bars indicating SEM. See also Figure S4, and Movies S3, S5 and S6.

Article Snippet: Rabbit polyclonal anti-human Ago2 , Cell Signaling , Cat# 2897S.

Techniques: Fluorescence, Microscopy, Labeling, In Vitro

Journal: Cell

Article Title: Phase transitions in the assembly and function of human miRISC

doi: 10.1016/j.cell.2018.02.051

Figure Lengend Snippet: (A) Ago2-TNRC6B droplets can be separated from the bulk solvent by centrifugation. Cartoon schematic of procedure (left), and images of droplets in input and supernatant fractions (right). (B) Droplets recruit full-length TNRC6B, Ago2, and miRNA target RNAs. TNRC6B (~1 mM, partially purified) was mixed with Ago2 (0.5 µM) loaded with either let-7 or miR122, and a 32P-labeled let-7 target RNA (8xlet7 target, ~3 nM). After centrifugation, supernatant and pellet fractions were analyzed by Coomassie stained SDS PAGE (right, top panel) and phosphorimaging of a denaturing gel (right, bottom panel). (C) Ago2 remains active in the separated phase. TNRC6B (~ 1 µM) was mixed with Ago2-miR122 (250 nM) and a 32P-labeled target RNA (~0.5 µM) with perfect complementarity to miR122 in the absence of divalent cations. After centrifugation MgCl2 (3 mM) was added to the separated phase. Target RNA was extracted and analyzed by denaturing PAGE and phosphorimaging (right panel). (D) TNRC6B-Ago2 droplets recruit other miRISC components. TNRC6B (40 nM) was mixed with Ago2 (40 nM) and soluble lysate from HEK 293 cells (OD260 ~3). Input, supernatant, and pellet fractions were analyzed by Western blot (right panel). See also Figure S5.

Article Snippet: Rabbit polyclonal anti-human Ago2 , Cell Signaling , Cat# 2897S.

Techniques: Solvent, Centrifugation, Purification, Labeling, Staining, SDS Page, Western Blot

Journal: Cell

Article Title: Phase transitions in the assembly and function of human miRISC

doi: 10.1016/j.cell.2018.02.051

Figure Lengend Snippet: (A) Schematic of experiment. (B) Deadenylation of a target RNA by miRISC. Ago2 (40 nM, final concentration), loaded with either let7 or miR122 (negative control), was mixed with a 32P-5'-cap-labeled target RNA harboring binding sites for let-7 and a 114 nt. poly(A) tail in the presence of soluble lysate from HEK 293 cells (OD260 ~3), with and without additional TNRC6B (~300 nM, partially purified). After a 15-minute incubation, supernatant and pellet fractions were isolated by centrifugation and target RNA was extracted and analyzed by denaturing PAGE and phosphorimaging. (C) Deadenylation timecourse. Reactions containing Ago2-let7 (40 nM) and soluble HEK 293 lysate (OD260 ~3), with and without exogenous TNRC6B (~300 nM, final concentration) were fractionated at various times, and analyzed by denaturing gel. (D) Estimation of deadenylation rates. Target RNA bands in (C) were quantified and fraction of total intact RNA (A114) for +/− TNRC6B conditions was plotted as a function of incubation time. Data were fit with a first order decay, yielding A114 half-lives of 40 and 4 minutes for plus and minus exogenous TNRC6B, respectively. Plotted data are the average of three independent experiments with SEM indicated as error bars. See also Figure S6.

Article Snippet: Rabbit polyclonal anti-human Ago2 , Cell Signaling , Cat# 2897S.

Techniques: Concentration Assay, Negative Control, Labeling, Binding Assay, Purification, Incubation, Isolation, Centrifugation

Journal: Cell

Article Title: Phase transitions in the assembly and function of human miRISC

doi: 10.1016/j.cell.2018.02.051

Figure Lengend Snippet: (A) PEG 8000 promotes TNRC6B-Ago2 phase separation. Images of droplets formed from Alexa-488 labeled TNRC6B (~20 nM) and Ago2 (200 nM) in the presence and absence of 5% (w/v) PEG 8000. (B) Effects of PEG 8000 on target deadenylation reactions. 8xlet7 deadenylation reactions containing combinations of Ago2 (20 nM), HEK 293 lysate (OD260 ~1.5), and exogenous TNRC6B (~30 nM) were treated with 5% (w/v) PEG 8000, separated into supernatant and pellet fractions, and analyzed by denaturing PAGE. (C) Effect of PEG 8000 on deadenylation rates. Reactions containing Ago2-let7 (20 nM), HEK 293 lysate (OD260 ~1.5), and exogenous TNRC6B (~30 nM) were treated with 5 % (w/v) PEG 8000, separated into supernatant and pellet fractions, and analyzed by denaturing PAGE at various times. (D) PEG 8000 accelerates deadenylation. Bands corresponding to target RNA species in (C) were quantified and fraction of intact target (A114) plotted as a function of time. Plotted data are the average of three independent experiments with SEM indicated as error bars. See also Figure S7.

Article Snippet: Rabbit polyclonal anti-human Ago2 , Cell Signaling , Cat# 2897S.

Techniques: Labeling

Journal: Cell

Article Title: Phase transitions in the assembly and function of human miRISC

doi: 10.1016/j.cell.2018.02.051

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: Rabbit polyclonal anti-human Ago2 , Cell Signaling , Cat# 2897S.

Techniques: Recombinant, Protease Inhibitor, Protein Purification, Cloning, Expressing, Synthesized, Software